PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476928
Common NameARALYDRAFT_476928
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 228aa    MW: 25399.1 Da    PI: 5.7778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-184090155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++ykGVr ++ +g+Wv eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  476928 40 KKYKGVRMRS-WGSWVTEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
            59*****998.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.05E-184099No hitNo description
PfamPF008471.1E-114190IPR001471AP2/ERF domain
PROSITE profilePS5103221.8124198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-304199IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-194198IPR016177DNA-binding domain
SMARTSM003803.0E-3441104IPR001471AP2/ERF domain
PRINTSPR003675.3E-94253IPR001471AP2/ERF domain
PRINTSPR003675.3E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVKQELKIQV TTSSSSLSHS SSSSSSTSGL LHQSCKNKIK KYKGVRMRSW GSWVTEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANLNFPNI TTTSPFLMNI DENTLFSPKS  120
IQKVAAQAAN SYVHDDGLHR HPSPSSSTAS SPPDDDHHND DDSDLVSLME SFVDYKEHVS  180
LMDPSWYEFE HNEMLFTNGA PFDYSPQLNS SMDDFYDDVD IRLWSFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A5e-153898263ATERF1
2gcc_A5e-153898263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107040.0AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAY5608430.0AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds.
GenBankBT0126290.0BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887694.11e-169hypothetical protein ARALYDRAFT_476928
SwissprotQ9CAP42e-98ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLD7KUL21e-169D7KUL2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__2058__AT1G77640.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.11e-94ERF family protein